Package: BayesianMCPMod 1.3.2
BayesianMCPMod: Simulate, Evaluate, and Analyze Dose Finding Trials with Bayesian MCPMod
Bayesian MCPMod (Fleischer et al. (2022) <doi:10.1002/pst.2193>) is an innovative method that improves the traditional MCPMod by systematically incorporating historical data, such as previous placebo group data. This package offers functions for simulating, analyzing, and evaluating Bayesian MCPMod trials with normally and binary distributed endpoints. It enables the assessment of trial designs incorporating historical data across various true dose-response relationships and sample sizes. Robust mixture prior distributions, such as those derived with the Meta-Analytic-Predictive approach (Schmidli et al. (2014) <doi:10.1111/biom.12242>), can be specified for each dose group. Resulting mixture posterior distributions are used in the Bayesian Multiple Comparison Procedure and modeling steps. The modeling step also includes a weighted model averaging approach (Pinheiro et al. (2014) <doi:10.1002/sim.6052>). Estimated dose-response relationships can be bootstrapped and visualized.
Authors:
BayesianMCPMod_1.3.2.tar.gz
BayesianMCPMod_1.3.2.zip(r-4.7)BayesianMCPMod_1.3.2.zip(r-4.6)BayesianMCPMod_1.3.2.zip(r-4.5)
BayesianMCPMod_1.3.2.tgz(r-4.6-any)BayesianMCPMod_1.3.2.tgz(r-4.5-any)
BayesianMCPMod_1.3.2.tar.gz(r-4.7-any)BayesianMCPMod_1.3.2.tar.gz(r-4.6-any)
BayesianMCPMod_1.3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BayesianMCPMod/json (API)
NEWS
| # Install 'BayesianMCPMod' in R: |
| install.packages('BayesianMCPMod', repos = c('https://boehringer-ingelheim.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/boehringer-ingelheim/bayesianmcpmod/issues
Pkgdown/docs site:https://boehringer-ingelheim.github.io
Last updated from:d234ace44e. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 298 | ||
| source / vignettes | OK | 450 | ||
| linux-release-x86_64 | OK | 261 | ||
| macos-release-arm64 | OK | 134 | ||
| macos-oldrel-arm64 | OK | 223 | ||
| windows-devel | OK | 195 | ||
| windows-release | OK | 191 | ||
| windows-oldrel | OK | 212 | ||
| wasm-release | OK | 162 |
Exports:assessDesigngetBootstrapQuantilesgetBootstrapSamplesgetContrgetCritProbgetESSgetMEDgetModelFitsgetPosteriorperformBayesianMCPperformBayesianMCPModsimulateData
Dependencies:abindassertthatbackportsbayesplotBHbitbit64bootbroomcallrcheckmateclicliprcodetoolscpp11crayondescdistributionalDoseFindingdplyrfarverforcatsforeachFormulaformula.toolsgenericsggplot2ggridgesglmnetgluegridExtragtablehavenhmsinlineisobanditeratorsjomojsonlitelabelinglatticelifecyclelme4logistfloomagrittrMASSMatrixmatrixStatsmgcvmiceminqamitmlmvtnormnlmenloptrnnetnumDerivoperator.toolsordinalpanpillarpkgbuildpkgconfigplyrposteriorprettyunitsprocessxprogresspspurrrQuickJSRR6RBesTrbibutilsRColorBrewerRcppRcppEigenRcppParallelRdpackreadrreformulasreshape2rlangrpartrstanrstantoolsS7scalesshapeStanHeadersstringistringrsurvivaltensorAtibbletidyrtidyselecttzdbucminfutf8vctrsviridisLitevroomwithr
Comparison of Bayesian MCPMod and MCPMod
Rendered fromSimulation_Comparison.Rmdusingknitr::rmarkdownon May 14 2026.Last update: 2026-02-15
Started: 2025-02-06
Trial Analysis Example of Bayesian MCPMod for Binary Data
Rendered frombinary_endpoint.Rmdusingknitr::rmarkdownon May 14 2026.Last update: 2026-05-13
Started: 2026-02-15
Trial Analysis Example of Bayesian MCPMod for Continuous Data
Rendered fromanalysis_normal.Rmdusingknitr::rmarkdownon May 14 2026.Last update: 2026-02-23
Started: 2023-10-20
Trial Simulation Example of Bayesian MCPMod for Binary Data
Rendered fromSimulation_Example_Binary.Rmdusingknitr::rmarkdownon May 14 2026.Last update: 2026-05-13
Started: 2026-02-15
Trial Simulation Example of Bayesian MCPMod for Continuous Data
Rendered fromSimulation_Example.Rmdusingknitr::rmarkdownon May 14 2026.Last update: 2026-02-23
Started: 2023-10-20
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| assessDesign | assessDesign |
| getBootstrapQuantiles | getBootstrapQuantiles |
| getBootstrapSamples | getBootstrapSamples |
| getContr | getContr |
| getCritProb | getCritProb |
| getESS | getESS |
| getMED | getMED |
| getModelFits | getModelFits |
| getPosterior | getPosterior |
| performBayesianMCP | performBayesianMCP |
| performBayesianMCPMod | performBayesianMCPMod |
| plot.modelFits | plot.modelFits |
| predict.modelFits | predict.modelFits |
| simulateData | simulateData |
