Package: BayesianMCPMod 1.3.2

Stephan Wojciekowski

BayesianMCPMod: Simulate, Evaluate, and Analyze Dose Finding Trials with Bayesian MCPMod

Bayesian MCPMod (Fleischer et al. (2022) <doi:10.1002/pst.2193>) is an innovative method that improves the traditional MCPMod by systematically incorporating historical data, such as previous placebo group data. This package offers functions for simulating, analyzing, and evaluating Bayesian MCPMod trials with normally and binary distributed endpoints. It enables the assessment of trial designs incorporating historical data across various true dose-response relationships and sample sizes. Robust mixture prior distributions, such as those derived with the Meta-Analytic-Predictive approach (Schmidli et al. (2014) <doi:10.1111/biom.12242>), can be specified for each dose group. Resulting mixture posterior distributions are used in the Bayesian Multiple Comparison Procedure and modeling steps. The modeling step also includes a weighted model averaging approach (Pinheiro et al. (2014) <doi:10.1002/sim.6052>). Estimated dose-response relationships can be bootstrapped and visualized.

Authors:Boehringer Ingelheim Pharma GmbH & Co. KG [cph, fnd], Stephan Wojciekowski [aut, cre], Lars Andersen [aut], Jonas Schick [ctb], Sebastian Bossert [aut]

BayesianMCPMod_1.3.2.tar.gz
BayesianMCPMod_1.3.2.zip(r-4.7)BayesianMCPMod_1.3.2.zip(r-4.6)BayesianMCPMod_1.3.2.zip(r-4.5)
BayesianMCPMod_1.3.2.tgz(r-4.6-any)BayesianMCPMod_1.3.2.tgz(r-4.5-any)
BayesianMCPMod_1.3.2.tar.gz(r-4.7-any)BayesianMCPMod_1.3.2.tar.gz(r-4.6-any)
BayesianMCPMod_1.3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
BayesianMCPMod/json (API)
NEWS

# Install 'BayesianMCPMod' in R:
install.packages('BayesianMCPMod', repos = c('https://boehringer-ingelheim.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/boehringer-ingelheim/bayesianmcpmod/issues

Pkgdown/docs site:https://boehringer-ingelheim.github.io

On CRAN:

Conda:

6.95 score 10 stars 7 scripts 247 downloads 12 exports 105 dependencies

Last updated from:d234ace44e. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK298
source / vignettesOK450
linux-release-x86_64OK261
macos-release-arm64OK134
macos-oldrel-arm64OK223
windows-develOK195
windows-releaseOK191
windows-oldrelOK212
wasm-releaseOK162

Exports:assessDesigngetBootstrapQuantilesgetBootstrapSamplesgetContrgetCritProbgetESSgetMEDgetModelFitsgetPosteriorperformBayesianMCPperformBayesianMCPModsimulateData

Dependencies:abindassertthatbackportsbayesplotBHbitbit64bootbroomcallrcheckmateclicliprcodetoolscpp11crayondescdistributionalDoseFindingdplyrfarverforcatsforeachFormulaformula.toolsgenericsggplot2ggridgesglmnetgluegridExtragtablehavenhmsinlineisobanditeratorsjomojsonlitelabelinglatticelifecyclelme4logistfloomagrittrMASSMatrixmatrixStatsmgcvmiceminqamitmlmvtnormnlmenloptrnnetnumDerivoperator.toolsordinalpanpillarpkgbuildpkgconfigplyrposteriorprettyunitsprocessxprogresspspurrrQuickJSRR6RBesTrbibutilsRColorBrewerRcppRcppEigenRcppParallelRdpackreadrreformulasreshape2rlangrpartrstanrstantoolsS7scalesshapeStanHeadersstringistringrsurvivaltensorAtibbletidyrtidyselecttzdbucminfutf8vctrsviridisLitevroomwithr

Comparison of Bayesian MCPMod and MCPMod

Rendered fromSimulation_Comparison.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2026-02-15
Started: 2025-02-06

Trial Analysis Example of Bayesian MCPMod for Binary Data

Rendered frombinary_endpoint.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2026-05-13
Started: 2026-02-15

Trial Analysis Example of Bayesian MCPMod for Continuous Data

Rendered fromanalysis_normal.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2026-02-23
Started: 2023-10-20

Trial Simulation Example of Bayesian MCPMod for Binary Data

Rendered fromSimulation_Example_Binary.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2026-05-13
Started: 2026-02-15

Trial Simulation Example of Bayesian MCPMod for Continuous Data

Rendered fromSimulation_Example.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2026-02-23
Started: 2023-10-20

Readme and manuals

Help Manual

Help pageTopics
assessDesignassessDesign
getBootstrapQuantilesgetBootstrapQuantiles
getBootstrapSamplesgetBootstrapSamples
getContrgetContr
getCritProbgetCritProb
getESSgetESS
getMEDgetMED
getModelFitsgetModelFits
getPosteriorgetPosterior
performBayesianMCPperformBayesianMCP
performBayesianMCPModperformBayesianMCPMod
plot.modelFitsplot.modelFits
predict.modelFitspredict.modelFits
simulateDatasimulateData