Package: oncomsm 0.1.5.9000

Kevin Kunzmann

oncomsm: Bayesian Multi-State Models for Early Oncology

Implements methods to fit a parametric Bayesian multi-state model to tumor response data. The model can be used to sample from the predictive distribution to impute missing data and calculate probability of success for custom decision criteria in early clinical trials during an ongoing trial. The inference is implemented using 'stan'.

Authors:Kevin Kunzmann [aut, cre], Karthik Ananthakrishnan [ctb], Boehringer Ingelheim Ltd. [cph, fnd]

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oncomsm.pdf |oncomsm.html✨
oncomsm/json (API)
NEWS

# Install 'oncomsm' in R:
install.packages('oncomsm', repos = c('https://boehringer-ingelheim.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/boehringer-ingelheim/oncomsm/issues

Pkgdown site:https://boehringer-ingelheim.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

5.80 score 8 stars 13 scripts 294 downloads 15 exports 68 dependencies

Last updated 2 years agofrom:02d816b057. Checks:4 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 23 2025
R-4.5-win-x86_64NOTEFeb 23 2025
R-4.5-mac-x86_64OKFeb 23 2025
R-4.5-mac-aarch64OKFeb 23 2025
R-4.5-linux-x86_64OKFeb 23 2025
R-4.4-win-x86_64NOTEFeb 23 2025
R-4.4-mac-x86_64NOTEFeb 23 2025
R-4.4-mac-aarch64NOTEFeb 23 2025
R-4.3-win-x86_64NOTEFeb 23 2025
R-4.3-mac-x86_64NOTEFeb 23 2025
R-4.3-mac-aarch64NOTEFeb 23 2025

Exports:check_datacompute_pfscreate_srpmodeldefine_srp_priorimputeparameter_sample_to_tibbleplot_mstateplot_pfsplot_response_probabilityplot_transition_timessample_posteriorsample_predictivesample_priorsimulate_decision_rulevisits_to_mstate

Dependencies:abindbackportsBHcallrcheckmateclicodetoolscolorspacecpp11descdigestdistributionaldplyrfansifarverfurrrfuturegenericsggplot2globalsgluegridExtragtableinlineisobandlabelinglatticelifecyclelistenvloomagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivparallellypillarpkgbuildpkgconfigposteriorprocessxpspurrrQuickJSRR6RColorBrewerRcppRcppEigenRcppNumericalRcppParallelrlangrstanrstantoolsscalesStanHeadersstringistringrtensorAtibbletidyrtidyselectutf8vctrsviridisLitewithr

Avoiding Bias During Interim Analyses

Rendered fromavoiding-bias.Rmdusingknitr::rmarkdownon Feb 23 2025.

Last update: 2023-02-15
Started: 2022-12-08

Multi-State Models for Oncology

Kevin Kunzmann

Rendered fromoncomsm.Rmdusingknitr::rmarkdownon Feb 23 2025.

Last update: 2023-04-17
Started: 2022-11-07

Prior Choice

Rendered fromprior-choice.Rmdusingknitr::rmarkdownon Feb 23 2025.

Last update: 2022-12-08
Started: 2022-11-29