Package: oncomsm 0.1.5.9000

Kevin Kunzmann

oncomsm: Bayesian Multi-State Models for Early Oncology

Implements methods to fit a parametric Bayesian multi-state model to tumor response data. The model can be used to sample from the predictive distribution to impute missing data and calculate probability of success for custom decision criteria in early clinical trials during an ongoing trial. The inference is implemented using 'stan'.

Authors:Kevin Kunzmann [aut, cre], Karthik Ananthakrishnan [ctb], Boehringer Ingelheim Ltd. [cph, fnd]

oncomsm_0.1.5.9000.tar.gz
oncomsm_0.1.5.9000.zip(r-4.5)oncomsm_0.1.5.9000.zip(r-4.4)oncomsm_0.1.5.9000.zip(r-4.3)
oncomsm_0.1.5.9000.tgz(r-4.4-x86_64)oncomsm_0.1.5.9000.tgz(r-4.4-arm64)oncomsm_0.1.5.9000.tgz(r-4.3-x86_64)oncomsm_0.1.5.9000.tgz(r-4.3-arm64)
oncomsm_0.1.5.9000.tar.gz(r-4.5-noble)oncomsm_0.1.5.9000.tar.gz(r-4.4-noble)
oncomsm.pdf |oncomsm.html✨
oncomsm/json (API)
NEWS

# Install 'oncomsm' in R:
install.packages('oncomsm', repos = c('https://boehringer-ingelheim.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/boehringer-ingelheim/oncomsm/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

5.80 score 8 stars 13 scripts 216 downloads 15 exports 68 dependencies

Last updated 2 years agofrom:02d816b057. Checks:OK: 2 NOTE: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-win-x86_64NOTEOct 26 2024
R-4.5-linux-x86_64OKOct 26 2024
R-4.4-win-x86_64NOTEOct 26 2024
R-4.4-mac-x86_64NOTEOct 26 2024
R-4.4-mac-aarch64NOTEOct 26 2024
R-4.3-win-x86_64NOTEOct 26 2024
R-4.3-mac-x86_64NOTEOct 26 2024
R-4.3-mac-aarch64NOTEOct 26 2024

Exports:check_datacompute_pfscreate_srpmodeldefine_srp_priorimputeparameter_sample_to_tibbleplot_mstateplot_pfsplot_response_probabilityplot_transition_timessample_posteriorsample_predictivesample_priorsimulate_decision_rulevisits_to_mstate

Dependencies:abindbackportsBHcallrcheckmateclicodetoolscolorspacecpp11descdigestdistributionaldplyrfansifarverfurrrfuturegenericsggplot2globalsgluegridExtragtableinlineisobandlabelinglatticelifecyclelistenvloomagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivparallellypillarpkgbuildpkgconfigposteriorprocessxpspurrrQuickJSRR6RColorBrewerRcppRcppEigenRcppNumericalRcppParallelrlangrstanrstantoolsscalesStanHeadersstringistringrtensorAtibbletidyrtidyselectutf8vctrsviridisLitewithr

Avoiding Bias During Interim Analyses

Rendered fromavoiding-bias.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2023-02-15
Started: 2022-12-08

Multi-State Models for Oncology

Kevin Kunzmann

Rendered fromoncomsm.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2023-04-17
Started: 2022-11-07

Prior Choice

Rendered fromprior-choice.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2022-12-08
Started: 2022-11-29